Variant report

Variant	rs1948826
Chromosome Location	chr4:127772892-127772893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:127695737..127697601-chr4:127770299..127773125,2	K562	blood:
2	chr4:127716621..127718255-chr4:127771445..127774248,2	K562	blood:
3	chr4:127771990..127773680-chr4:127776900..127779323,2	K562	blood:
4	chr4:127771841..127773556-chr4:127876449..127879979,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10446736	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11724587	0.86[EUR][1000 genomes]
rs11724702	0.86[EUR][1000 genomes]
rs11731527	0.84[EUR][1000 genomes]
rs11732835	0.86[EUR][1000 genomes]
rs11734063	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11942125	0.86[EUR][1000 genomes]
rs12504419	0.87[CEU][hapmap]
rs12511029	0.83[EUR][1000 genomes]
rs12645687	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12646282	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12646727	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13104202	0.86[EUR][1000 genomes]
rs13114288	0.86[EUR][1000 genomes]
rs13114331	0.86[EUR][1000 genomes]
rs13115066	0.84[EUR][1000 genomes]
rs13117741	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13121117	0.86[EUR][1000 genomes]
rs13122470	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13135503	0.86[EUR][1000 genomes]
rs13147729	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13148630	0.80[EUR][1000 genomes]
rs13148797	0.86[EUR][1000 genomes]
rs13152329	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13152790	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1472702	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1503609	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1503613	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1503632	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1503634	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1604721	0.86[EUR][1000 genomes]
rs1604722	0.86[EUR][1000 genomes]
rs16997944	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089063	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2102215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2134642	0.94[ASN][1000 genomes]
rs2174181	0.81[EUR][1000 genomes]
rs4000747	0.81[EUR][1000 genomes]
rs4397007	0.86[EUR][1000 genomes]
rs4639084	0.86[EUR][1000 genomes]
rs4833357	0.86[EUR][1000 genomes]
rs4834148	0.86[EUR][1000 genomes]
rs4834152	0.83[EUR][1000 genomes]
rs6534582	0.85[AMR][1000 genomes]
rs6822430	0.84[EUR][1000 genomes]
rs6855733	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7439947	0.86[EUR][1000 genomes]
rs7677910	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127770200-127773000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:127770200-127773200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:127770200-127773400	Enhancers	NH-A	brain
4	chr4:127770200-127773400	Enhancers	NHDF-Ad	bronchial
5	chr4:127770600-127773400	Enhancers	HMEC	breast
6	chr4:127771400-127773200	Enhancers	K562	blood
7	chr4:127772400-127773400	Weak transcription	HSMM	muscle
8	chr4:127772800-127777800	Weak transcription	NHEK	skin
9	chr4:127772800-127792000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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