Variant report

Variant	rs1503613
Chromosome Location	chr4:127772368-127772369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10446736	0.94[ASN][1000 genomes]
rs11734063	0.81[ASN][1000 genomes]
rs12645687	0.86[ASN][1000 genomes]
rs12646282	0.87[ASN][1000 genomes]
rs12646727	0.82[ASN][1000 genomes]
rs13117741	0.80[ASN][1000 genomes]
rs13122470	0.87[ASN][1000 genomes]
rs13152329	0.93[ASN][1000 genomes]
rs13152790	0.87[ASN][1000 genomes]
rs1472702	0.93[ASN][1000 genomes]
rs1503609	0.98[ASN][1000 genomes]
rs1503632	0.94[ASN][1000 genomes]
rs1503634	0.94[ASN][1000 genomes]
rs16997944	0.94[ASN][1000 genomes]
rs1948826	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2089063	0.90[ASN][1000 genomes]
rs2102215	0.90[ASN][1000 genomes]
rs2134642	0.95[ASN][1000 genomes]
rs6855733	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv879912	chr4:127706053-127775563	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3367258	chr4:127749396-127772702	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv428773	chr4:127760014-127913973	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127770200-127772800	Enhancers	NHEK	skin
2	chr4:127770200-127773000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:127770200-127773200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:127770200-127773400	Enhancers	NH-A	brain
5	chr4:127770200-127773400	Enhancers	NHDF-Ad	bronchial
6	chr4:127770400-127772800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:127770600-127772600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:127770600-127773400	Enhancers	HMEC	breast
9	chr4:127770800-127772600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:127771000-127772400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:127771200-127772400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:127771400-127773200	Enhancers	K562	blood
13	chr4:127771600-127772400	Enhancers	HSMM	muscle
14	chr4:127771600-127772800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:127771800-127772800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:127772000-127772800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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