Variant report

Variant	rs13126826
Chromosome Location	chr4:54562285-54562286
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2246770	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2590783	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616439	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616440	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2668531	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13126826		cis	Lymphoblastoid	GTEx
rs13126826	Hs.164463	cis	multi-tissue	Pritchard

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54555600-54568600	Weak transcription	Right Atrium	heart
2	chr4:54560000-54564800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:54560400-54568000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:54560400-54568600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54561000-54562400	Enhancers	NHDF-Ad	bronchial
6	chr4:54561400-54562400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:54561600-54562600	Flanking Active TSS	GM12878-XiMat	blood
8	chr4:54561600-54568400	Weak transcription	Fetal Brain Male	brain
9	chr4:54561800-54562400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:54561800-54562400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:54561800-54564200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:54562000-54562400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr4:54562000-54562400	Enhancers	Primary B cells from peripheral blood	blood
14	chr4:54562000-54562600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr4:54562000-54568600	Weak transcription	Placenta	Placenta
16	chr4:54562200-54566600	Weak transcription	Spleen	Spleen
17	chr4:54562200-54568600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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