Variant report

Variant	rs2590783
Chromosome Location	chr4:54559738-54559739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13126826	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17083304	0.96[LWK][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs2246770	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2616439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2616440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54551000-54559800	Weak transcription	Aorta	Aorta
2	chr4:54554800-54562000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:54555000-54560000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:54555600-54559800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:54555600-54560000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:54555600-54561800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:54555600-54568600	Weak transcription	Right Atrium	heart
8	chr4:54555800-54559800	Weak transcription	HMEC	breast
9	chr4:54556400-54559800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:54559200-54560400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:54559400-54560200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:54559400-54560400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:54559400-54560400	Enhancers	Brain Angular Gyrus	brain
14	chr4:54559400-54560400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:54559400-54560600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:54559400-54561000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:54559600-54560200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:54559600-54560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:54559600-54562000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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