Variant report

Variant	rs2616440
Chromosome Location	chr4:54557569-54557570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13126826	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246770	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2590783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2616439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2668531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2616440	Hs.164463	cis	multi-tissue	Pritchard
rs2616440		cis	Lymphoblastoid	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54551000-54559800	Weak transcription	Aorta	Aorta
2	chr4:54553600-54559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:54554400-54559400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:54554800-54562000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:54555000-54559400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:54555000-54560000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:54555600-54559600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:54555600-54559800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:54555600-54560000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:54555600-54561800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:54555600-54568600	Weak transcription	Right Atrium	heart
12	chr4:54555800-54559800	Weak transcription	HMEC	breast
13	chr4:54556000-54559400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:54556400-54559800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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