Variant report
| Variant | rs13139355 |
|---|---|
| Chromosome Location | chr4:20133405-20133406 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11939337 | 0.82[EUR][1000 genomes] |
| rs12499745 | 0.82[EUR][1000 genomes] |
| rs13120536 | 0.82[EUR][1000 genomes] |
| rs13120734 | 0.81[EUR][1000 genomes] |
| rs13147481 | 0.82[EUR][1000 genomes] |
| rs1344851 | 0.80[EUR][1000 genomes] |
| rs1369891 | 0.80[EUR][1000 genomes] |
| rs1561123 | 0.80[EUR][1000 genomes] |
| rs1561124 | 0.80[EUR][1000 genomes] |
| rs2322261 | 0.88[EUR][1000 genomes] |
| rs34076755 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs34116790 | 0.86[EUR][1000 genomes] |
| rs34517540 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35715844 | 0.82[EUR][1000 genomes] |
| rs36179390 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3906730 | 0.80[EUR][1000 genomes] |
| rs6814369 | 0.80[EUR][1000 genomes] |
| rs6825406 | 0.82[EUR][1000 genomes] |
| rs6826141 | 0.82[EUR][1000 genomes] |
| rs6847132 | 0.82[EUR][1000 genomes] |
| rs6847442 | 0.82[EUR][1000 genomes] |
| rs6847652 | 0.82[EUR][1000 genomes] |
| rs6847857 | 0.82[EUR][1000 genomes] |
| rs71605393 | 0.85[EUR][1000 genomes] |
| rs71605397 | 0.82[EUR][1000 genomes] |
| rs71605398 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73803214 | 0.82[EUR][1000 genomes] |
| rs7655386 | 0.82[EUR][1000 genomes] |
| rs7656030 | 0.81[EUR][1000 genomes] |
| rs7656084 | 0.82[EUR][1000 genomes] |
| rs7656530 | 0.82[EUR][1000 genomes] |
| rs7666594 | 0.88[EUR][1000 genomes] |
| rs934630 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:20131600-20134000 | Weak transcription | Pancreas | Pancrea |
