Variant report
| Variant | rs2322261 |
|---|---|
| Chromosome Location | chr4:20111729-20111730 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1185160 | 0.87[ASN][1000 genomes] |
| rs13120738 | 0.81[EUR][1000 genomes] |
| rs13139355 | 0.88[EUR][1000 genomes] |
| rs13151189 | 1.00[CHB][hapmap] |
| rs1344851 | 0.87[ASN][1000 genomes] |
| rs1344852 | 0.87[ASN][1000 genomes] |
| rs1369891 | 0.87[ASN][1000 genomes] |
| rs1561124 | 0.87[ASN][1000 genomes] |
| rs2322346 | 0.87[ASN][1000 genomes] |
| rs2575080 | 0.87[ASN][1000 genomes] |
| rs34076755 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34517540 | 0.88[EUR][1000 genomes] |
| rs3906730 | 0.87[ASN][1000 genomes] |
| rs4560407 | 0.87[ASN][1000 genomes] |
| rs4572880 | 0.87[ASN][1000 genomes] |
| rs517903 | 0.87[ASN][1000 genomes] |
| rs532059 | 0.87[ASN][1000 genomes] |
| rs568698 | 1.00[ASN][1000 genomes] |
| rs571400 | 0.87[ASN][1000 genomes] |
| rs587668 | 0.87[ASN][1000 genomes] |
| rs593770 | 0.87[ASN][1000 genomes] |
| rs601699 | 0.87[ASN][1000 genomes] |
| rs606761 | 0.87[ASN][1000 genomes] |
| rs608951 | 0.87[ASN][1000 genomes] |
| rs613798 | 0.87[ASN][1000 genomes] |
| rs6447941 | 0.80[EUR][1000 genomes] |
| rs677198 | 0.87[ASN][1000 genomes] |
| rs685064 | 0.87[ASN][1000 genomes] |
| rs71605393 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71605398 | 0.88[EUR][1000 genomes] |
| rs7666594 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs934630 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2752044 | chr4:19788263-20126804 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:20110600-20111800 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 2 | chr4:20111200-20111800 | Active TSS | Monocytes-CD14+_RO01746 | blood |
