Variant report

Variant	rs4560407
Chromosome Location	chr4:20180870-20180871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10006750	1.00[JPT][hapmap]
rs1185160	1.00[ASN][1000 genomes]
rs13151189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369891	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1561124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322261	0.87[ASN][1000 genomes]
rs2575080	1.00[ASN][1000 genomes]
rs2575082	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575083	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575084	0.85[EUR][1000 genomes]
rs2760119	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34076755	0.87[ASN][1000 genomes]
rs36179390	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3906730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572880	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517903	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532059	1.00[ASN][1000 genomes]
rs532999	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs568698	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs571400	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587668	1.00[ASN][1000 genomes]
rs593770	1.00[ASN][1000 genomes]
rs601699	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606761	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608951	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613798	1.00[ASN][1000 genomes]
rs624354	0.89[CEU][hapmap]
rs677198	1.00[ASN][1000 genomes]
rs6814369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs685064	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605393	0.87[ASN][1000 genomes]
rs73244294	0.86[ASN][1000 genomes]
rs7666594	0.87[ASN][1000 genomes]
rs934630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20176800-20194400	Weak transcription	Osteobl	bone
2	chr4:20180600-20181200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:20180800-20181200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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