Variant report

Variant	rs571400
Chromosome Location	chr4:20203670-20203671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10006750	1.00[JPT][hapmap]
rs1185160	1.00[ASN][1000 genomes]
rs13151189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344851	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344852	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369891	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561123	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1561124	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322261	0.87[ASN][1000 genomes]
rs2575080	1.00[ASN][1000 genomes]
rs2575082	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575083	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575084	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2760119	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34076755	0.87[ASN][1000 genomes]
rs36179390	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3906730	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560407	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572880	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532059	1.00[ASN][1000 genomes]
rs532999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs568698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs587668	1.00[ASN][1000 genomes]
rs593770	1.00[ASN][1000 genomes]
rs593943	0.81[CEU][hapmap]
rs601699	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606761	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608951	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613798	1.00[ASN][1000 genomes]
rs677198	1.00[ASN][1000 genomes]
rs6814369	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs685064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605393	0.87[ASN][1000 genomes]
rs73244294	0.86[ASN][1000 genomes]
rs7666594	0.87[ASN][1000 genomes]
rs934630	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20197600-20205000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:20197600-20205000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:20198200-20205000	Weak transcription	NHLF	lung
4	chr4:20199400-20205600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:20199600-20204200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:20199600-20204800	Weak transcription	Osteobl	bone
7	chr4:20199800-20204600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:20202400-20205000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:20203600-20204200	Weak transcription	NHDF-Ad	bronchial

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