Variant report

Variant	rs601699
Chromosome Location	chr4:20198377-20198378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1185160	1.00[ASN][1000 genomes]
rs1344851	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344852	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1369891	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561123	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1561124	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322261	0.87[ASN][1000 genomes]
rs2575080	1.00[ASN][1000 genomes]
rs2575082	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575083	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575084	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2760119	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34076755	0.87[ASN][1000 genomes]
rs3906730	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560407	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572880	1.00[ASN][1000 genomes]
rs517903	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532059	1.00[ASN][1000 genomes]
rs532999	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs568698	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs571400	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587668	1.00[ASN][1000 genomes]
rs593770	1.00[ASN][1000 genomes]
rs606761	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608951	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613798	1.00[ASN][1000 genomes]
rs677198	1.00[ASN][1000 genomes]
rs6814369	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs685064	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605393	0.87[ASN][1000 genomes]
rs73244294	0.86[ASN][1000 genomes]
rs7666594	0.87[ASN][1000 genomes]
rs934630	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20194200-20199600	Enhancers	NHDF-Ad	bronchial
2	chr4:20194200-20199800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:20194400-20198400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:20194600-20198400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:20196600-20199600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:20197400-20199400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:20197600-20199600	Enhancers	Osteobl	bone
8	chr4:20197600-20205000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:20197600-20205000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:20198200-20205000	Weak transcription	NHLF	lung

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