Variant report

Variant	rs517903
Chromosome Location	chr4:20195890-20195891
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20195655..20196157-chrX:69563999..69564842,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10006750	1.00[JPT][hapmap]
rs1185160	1.00[ASN][1000 genomes]
rs13151189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1344851	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1344852	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369891	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561123	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1561124	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2322261	0.87[ASN][1000 genomes]
rs2575080	1.00[ASN][1000 genomes]
rs2575082	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575083	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2575084	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2760119	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34076755	0.87[ASN][1000 genomes]
rs36179390	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3906730	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4560407	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572880	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532059	1.00[ASN][1000 genomes]
rs532999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs568698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs571400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587668	1.00[ASN][1000 genomes]
rs593770	1.00[ASN][1000 genomes]
rs593943	0.81[CEU][hapmap]
rs601699	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606761	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608951	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs613798	1.00[ASN][1000 genomes]
rs677198	1.00[ASN][1000 genomes]
rs6814369	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs685064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71605393	0.87[ASN][1000 genomes]
rs73244294	0.86[ASN][1000 genomes]
rs7666594	0.87[ASN][1000 genomes]
rs934630	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822501	chr4:20195633-20196572	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20194200-20197600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:20194200-20197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:20194200-20197800	Enhancers	HMEC	breast
4	chr4:20194200-20197800	Enhancers	NHEK	skin
5	chr4:20194200-20199600	Enhancers	NHDF-Ad	bronchial
6	chr4:20194200-20199800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:20194400-20196000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:20194400-20196600	Enhancers	Fetal Lung	lung
9	chr4:20194400-20198400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:20194600-20197400	Enhancers	HUVEC	blood vessel
11	chr4:20194600-20197800	Enhancers	NH-A	brain
12	chr4:20194600-20198200	Enhancers	NHLF	lung
13	chr4:20194600-20198400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:20194800-20196400	Enhancers	Fetal Stomach	stomach
15	chr4:20194800-20197000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:20195000-20196600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:20195000-20196600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:20195200-20196200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr4:20195200-20196400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:20195200-20196600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:20195200-20197400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:20195200-20198200	Enhancers	Hela-S3	cervix
23	chr4:20195400-20197400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:20195800-20196200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr4:20195800-20196200	Flanking Active TSS	Osteobl	bone
26	chr4:20195800-20197200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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