Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10027133	0.91[EUR][1000 genomes]
rs10516324	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10516325	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10939791	0.91[AMR][1000 genomes]
rs11728685	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11728784	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11729200	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11937623	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13101844	0.82[AMR][1000 genomes]
rs13105996	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13124435	0.82[AMR][1000 genomes]
rs13126168	0.81[AMR][1000 genomes]
rs13130983	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13132441	0.85[EUR][1000 genomes]
rs13140833	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13147042	0.81[AMR][1000 genomes]
rs13152448	0.91[AMR][1000 genomes]
rs28802405	0.83[AMR][1000 genomes]
rs6827068	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6846041	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs924970	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs959296	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13140382	NCAPG	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18440200-18442200	Weak transcription	Fetal Intestine Small	intestine
2	chr4:18441000-18442200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:18441600-18443200	Enhancers	Adipose Nuclei	Adipose
4	chr4:18442000-18442800	Active TSS	Pancreatic Islets	Pancreatic Islet

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