Variant report

Variant	rs10516325
Chromosome Location	chr4:18445000-18445001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18439763..18441872-chr4:18443790..18445400,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10015350	0.86[ASN][1000 genomes]
rs10027133	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516323	0.86[ASN][1000 genomes]
rs10516324	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10939791	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11727712	0.91[ASN][1000 genomes]
rs11727777	0.92[ASN][1000 genomes]
rs11728685	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11728784	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11729200	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11937623	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13101844	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13105376	0.92[ASN][1000 genomes]
rs13105996	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13124256	0.92[ASN][1000 genomes]
rs13124435	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13124829	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13126168	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13130983	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13132441	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13140382	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13140833	0.90[EUR][1000 genomes]
rs13147042	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13147682	0.92[ASN][1000 genomes]
rs13148145	0.90[ASN][1000 genomes]
rs13149685	0.90[ASN][1000 genomes]
rs13152448	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1382092	0.86[ASN][1000 genomes]
rs1477899	0.82[ASN][1000 genomes]
rs17468474	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1903834	0.86[ASN][1000 genomes]
rs2016591	0.81[ASN][1000 genomes]
rs2016926	0.86[ASN][1000 genomes]
rs2100904	0.86[ASN][1000 genomes]
rs2100905	0.86[ASN][1000 genomes]
rs2135340	0.86[ASN][1000 genomes]
rs2135342	0.86[ASN][1000 genomes]
rs2254416	0.86[ASN][1000 genomes]
rs28802405	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4235395	0.81[ASN][1000 genomes]
rs4315782	0.86[ASN][1000 genomes]
rs4348090	0.86[ASN][1000 genomes]
rs6449382	0.86[ASN][1000 genomes]
rs6449383	0.86[ASN][1000 genomes]
rs66461394	0.92[ASN][1000 genomes]
rs66654225	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66900680	0.92[ASN][1000 genomes]
rs67171630	0.92[ASN][1000 genomes]
rs67314558	0.92[ASN][1000 genomes]
rs6813428	0.92[ASN][1000 genomes]
rs6814566	0.86[ASN][1000 genomes]
rs6816319	0.84[ASN][1000 genomes]
rs6827068	0.90[EUR][1000 genomes]
rs6832733	0.86[ASN][1000 genomes]
rs6846041	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7659912	0.86[ASN][1000 genomes]
rs7678905	0.86[ASN][1000 genomes]
rs7699861	0.86[ASN][1000 genomes]
rs924970	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs924971	0.86[ASN][1000 genomes]
rs924972	0.86[ASN][1000 genomes]
rs924973	0.86[ASN][1000 genomes]
rs931837	0.86[ASN][1000 genomes]
rs959296	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18443000-18445000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:18444600-18446600	Enhancers	Fetal Intestine Large	intestine
3	chr4:18445000-18445400	Enhancers	Fetal Intestine Small	intestine

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