Variant report

Variant	rs2135340
Chromosome Location	chr4:18491018-18491019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LCORL-1	chr4:18490910-18491131	XLOC_003900

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10015350	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027133	0.88[ASN][1000 genomes]
rs10516323	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516324	0.87[ASN][1000 genomes]
rs10516325	0.86[ASN][1000 genomes]
rs10939791	0.90[ASN][1000 genomes]
rs11727712	0.87[ASN][1000 genomes]
rs11727777	0.89[ASN][1000 genomes]
rs11728685	0.90[ASN][1000 genomes]
rs11728784	0.87[ASN][1000 genomes]
rs11729200	0.89[ASN][1000 genomes]
rs11937623	0.88[ASN][1000 genomes]
rs13101844	0.89[ASN][1000 genomes]
rs13105376	0.88[ASN][1000 genomes]
rs13105996	0.90[ASN][1000 genomes]
rs13124256	0.89[ASN][1000 genomes]
rs13124435	0.89[ASN][1000 genomes]
rs13124829	0.89[ASN][1000 genomes]
rs13126168	0.89[ASN][1000 genomes]
rs13130983	0.88[ASN][1000 genomes]
rs13132441	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13147042	0.89[ASN][1000 genomes]
rs13147682	0.89[ASN][1000 genomes]
rs13148145	0.86[ASN][1000 genomes]
rs13149685	0.86[ASN][1000 genomes]
rs13152448	0.89[ASN][1000 genomes]
rs1382092	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1382097	0.85[ASN][1000 genomes]
rs17468474	0.89[ASN][1000 genomes]
rs1903834	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016926	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100904	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100905	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135342	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254416	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28802405	0.83[ASN][1000 genomes]
rs4315782	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348090	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449382	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449383	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6449386	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66461394	0.89[ASN][1000 genomes]
rs66654225	0.89[ASN][1000 genomes]
rs66900680	0.89[ASN][1000 genomes]
rs67171630	0.89[ASN][1000 genomes]
rs67314558	0.89[ASN][1000 genomes]
rs6813428	0.89[ASN][1000 genomes]
rs6814566	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6816319	0.80[ASN][1000 genomes]
rs6832733	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846041	0.90[ASN][1000 genomes]
rs7659912	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678905	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699861	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924970	0.90[ASN][1000 genomes]
rs924971	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924972	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs924973	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931837	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18490000-18492400	Weak transcription	Fetal Intestine Large	intestine
2	chr4:18490600-18492000	ZNF genes & repeats	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links