Variant report

Variant	rs11728784
Chromosome Location	chr4:18422893-18422894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10015350	0.87[ASN][1000 genomes]
rs10027133	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516323	0.87[ASN][1000 genomes]
rs10516324	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10516325	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939791	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11727712	0.88[ASN][1000 genomes]
rs11727777	0.90[ASN][1000 genomes]
rs11728685	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11729200	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11937623	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12649934	0.81[ASN][1000 genomes]
rs13101844	0.90[ASN][1000 genomes]
rs13105376	0.89[ASN][1000 genomes]
rs13105996	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13124256	0.90[ASN][1000 genomes]
rs13124435	0.90[ASN][1000 genomes]
rs13124829	0.90[ASN][1000 genomes]
rs13126168	0.90[ASN][1000 genomes]
rs13130983	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13132441	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13140382	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13140833	0.92[EUR][1000 genomes]
rs13147042	0.90[ASN][1000 genomes]
rs13147682	0.90[ASN][1000 genomes]
rs13148145	0.88[ASN][1000 genomes]
rs13149685	0.88[ASN][1000 genomes]
rs13152448	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1382092	0.87[ASN][1000 genomes]
rs17468474	0.90[ASN][1000 genomes]
rs1903834	0.87[ASN][1000 genomes]
rs2016926	0.87[ASN][1000 genomes]
rs2100904	0.87[ASN][1000 genomes]
rs2100905	0.87[ASN][1000 genomes]
rs2135340	0.87[ASN][1000 genomes]
rs2135342	0.87[ASN][1000 genomes]
rs2254416	0.87[ASN][1000 genomes]
rs28802405	0.84[ASN][1000 genomes]
rs4315782	0.87[ASN][1000 genomes]
rs4348090	0.87[ASN][1000 genomes]
rs6449382	0.87[ASN][1000 genomes]
rs6449383	0.87[ASN][1000 genomes]
rs66461394	0.90[ASN][1000 genomes]
rs66654225	0.90[ASN][1000 genomes]
rs66900680	0.90[ASN][1000 genomes]
rs67171630	0.90[ASN][1000 genomes]
rs67314558	0.90[ASN][1000 genomes]
rs6813428	0.90[ASN][1000 genomes]
rs6814566	0.87[ASN][1000 genomes]
rs6816319	0.81[ASN][1000 genomes]
rs6827068	0.92[EUR][1000 genomes]
rs6832733	0.87[ASN][1000 genomes]
rs6846041	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7659912	0.87[ASN][1000 genomes]
rs7678905	0.87[ASN][1000 genomes]
rs7699861	0.87[ASN][1000 genomes]
rs924970	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs924971	0.87[ASN][1000 genomes]
rs924972	0.87[ASN][1000 genomes]
rs924973	0.87[ASN][1000 genomes]
rs931837	0.87[ASN][1000 genomes]
rs959296	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18419000-18424200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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