Variant report

Variant	rs13141591
Chromosome Location	chr4:95588449-95588450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95587418..95589202-chr4:95610203..95611805,2	MCF-7	breast:
2	chr4:95586812..95588738-chr4:95612265..95614462,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10031667	1.00[EUR][1000 genomes]
rs13107595	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2865371	1.00[EUR][1000 genomes]
rs6532493	1.00[EUR][1000 genomes]
rs6823559	1.00[EUR][1000 genomes]
rs6834677	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7662768	1.00[EUR][1000 genomes]
rs7662914	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1005816	chr4:95573444-95902704	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95525000-95590000	Weak transcription	Lung	lung
2	chr4:95527800-95592200	Weak transcription	Pancreas	Pancrea
3	chr4:95533800-95594200	Weak transcription	Gastric	stomach
4	chr4:95537600-95592800	Weak transcription	Fetal Stomach	stomach
5	chr4:95540200-95597800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:95541200-95595600	Weak transcription	Primary T cells from cord blood	blood
7	chr4:95557200-95588600	Weak transcription	GM12878-XiMat	blood
8	chr4:95559000-95590200	Weak transcription	Right Ventricle	heart
9	chr4:95563600-95589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:95564000-95595000	Weak transcription	NHDF-Ad	bronchial
11	chr4:95570800-95599800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:95572400-95588800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:95573600-95595000	Weak transcription	Small Intestine	intestine
14	chr4:95574800-95591600	Weak transcription	Stomach Mucosa	stomach
15	chr4:95575000-95590800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:95575800-95590200	Strong transcription	Osteobl	bone
17	chr4:95576200-95598000	Weak transcription	Aorta	Aorta
18	chr4:95576200-95598200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:95578600-95589200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:95578600-95593800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:95579000-95592400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:95580000-95597800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:95581400-95590000	Strong transcription	NH-A	brain
24	chr4:95582000-95595400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:95582000-95599800	Weak transcription	NHEK	skin
26	chr4:95582400-95592200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:95582400-95594200	Weak transcription	Esophagus	oesophagus
28	chr4:95582400-95596200	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:95582400-95598200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:95582600-95589600	Strong transcription	Liver	Liver
31	chr4:95582600-95593800	Weak transcription	Ovary	ovary
32	chr4:95582600-95600000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr4:95582800-95598000	Weak transcription	Fetal Heart	heart
34	chr4:95585000-95592200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:95585200-95592200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:95585200-95592200	Weak transcription	Adipose Nuclei	Adipose
37	chr4:95585200-95593600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr4:95585200-95598200	Weak transcription	Colon Smooth Muscle	Colon
39	chr4:95585800-95590400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:95586000-95594000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:95586000-95598000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:95586600-95594000	Weak transcription	Fetal Intestine Small	intestine
43	chr4:95586600-95594200	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr4:95587200-95589200	Strong transcription	HUVEC	blood vessel
45	chr4:95587200-95589800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:95587400-95590200	Strong transcription	HMEC	breast
47	chr4:95587400-95598000	Weak transcription	HSMMtube	muscle
48	chr4:95587600-95589600	Weak transcription	NHLF	lung
49	chr4:95587600-95590000	Weak transcription	Fetal Kidney	kidney
50	chr4:95587600-95590200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links