Variant report

Variant	rs6834677
Chromosome Location	chr4:95559535-95559536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95557063..95559920-chr4:95560261..95562181,2	K562	blood:
2	chr4:95540920..95543603-chr4:95558219..95560946,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10031667	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10033359	1.00[CEU][hapmap]
rs13107595	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs13141591	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2452587	1.00[CEU][hapmap]
rs2865371	1.00[EUR][1000 genomes]
rs6532493	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6823559	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7662768	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7662914	1.00[EUR][1000 genomes]
rs774983	1.00[CEU][hapmap]
rs966845	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
3	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:95525000-95590000	Weak transcription	Lung	lung
7	chr4:95525400-95562200	Weak transcription	NHLF	lung
8	chr4:95527800-95592200	Weak transcription	Pancreas	Pancrea
9	chr4:95533800-95594200	Weak transcription	Gastric	stomach
10	chr4:95537000-95563000	Weak transcription	K562	blood
11	chr4:95537600-95573400	Weak transcription	Spleen	Spleen
12	chr4:95537600-95592800	Weak transcription	Fetal Stomach	stomach
13	chr4:95538000-95585200	Weak transcription	Colonic Mucosa	Colon
14	chr4:95538200-95582600	Weak transcription	Hela-S3	cervix
15	chr4:95538200-95586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:95538600-95587000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:95539800-95561000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:95540000-95560600	Weak transcription	HepG2	liver
19	chr4:95540000-95566800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:95540000-95587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:95540200-95597800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr4:95540400-95561400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:95540400-95570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:95541000-95572600	Weak transcription	Small Intestine	intestine
25	chr4:95541200-95595600	Weak transcription	Primary T cells from cord blood	blood
26	chr4:95541400-95560800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:95541400-95561200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:95541400-95580200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:95541600-95561600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:95541600-95571400	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:95543000-95586000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:95543000-95586400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr4:95545000-95561400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:95545600-95560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:95546000-95560400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr4:95546600-95560400	Weak transcription	Adipose Nuclei	Adipose
37	chr4:95547800-95573000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr4:95549000-95586600	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:95551200-95563600	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:95551400-95560400	Weak transcription	Liver	Liver
41	chr4:95553000-95560000	Weak transcription	Colon Smooth Muscle	Colon
42	chr4:95553000-95560200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr4:95555200-95566600	Weak transcription	Fetal Intestine Large	intestine
44	chr4:95555200-95578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:95555200-95581800	Weak transcription	Ovary	ovary
46	chr4:95555400-95560000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:95555400-95560400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:95555600-95561000	Weak transcription	Aorta	Aorta
49	chr4:95555600-95561400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:95556000-95560200	Weak transcription	HUVEC	blood vessel

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