Variant report

Variant	rs6532493
Chromosome Location	chr4:95560891-95560892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95540920..95543603-chr4:95558219..95560946,2	K562	blood:
2	chr4:95557063..95559920-chr4:95560261..95562181,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10001372	1.00[AFR][1000 genomes]
rs10031667	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033359	1.00[CEU][hapmap]
rs13107595	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13141591	1.00[EUR][1000 genomes]
rs2452587	1.00[CEU][hapmap]
rs2452596	1.00[AFR][1000 genomes]
rs2865371	1.00[EUR][1000 genomes]
rs4699303	1.00[AFR][1000 genomes]
rs6822264	1.00[AFR][1000 genomes]
rs6823559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834677	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7662768	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7662914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs774983	1.00[CEU][hapmap]
rs966845	1.00[CEU][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
3	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:95525000-95590000	Weak transcription	Lung	lung
7	chr4:95525400-95562200	Weak transcription	NHLF	lung
8	chr4:95527800-95592200	Weak transcription	Pancreas	Pancrea
9	chr4:95533800-95594200	Weak transcription	Gastric	stomach
10	chr4:95537000-95563000	Weak transcription	K562	blood
11	chr4:95537600-95573400	Weak transcription	Spleen	Spleen
12	chr4:95537600-95592800	Weak transcription	Fetal Stomach	stomach
13	chr4:95538000-95585200	Weak transcription	Colonic Mucosa	Colon
14	chr4:95538200-95582600	Weak transcription	Hela-S3	cervix
15	chr4:95538200-95586600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:95538600-95587000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:95539800-95561000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:95540000-95566800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:95540000-95587000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:95540200-95597800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:95540400-95561400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:95540400-95570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:95541000-95572600	Weak transcription	Small Intestine	intestine
24	chr4:95541200-95595600	Weak transcription	Primary T cells from cord blood	blood
25	chr4:95541400-95561200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:95541400-95580200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr4:95541600-95561600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:95541600-95571400	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:95543000-95586000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:95543000-95586400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:95545000-95561400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:95547800-95573000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr4:95549000-95586600	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:95551200-95563600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:95555200-95566600	Weak transcription	Fetal Intestine Large	intestine
36	chr4:95555200-95578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:95555200-95581800	Weak transcription	Ovary	ovary
38	chr4:95555600-95561000	Weak transcription	Aorta	Aorta
39	chr4:95555600-95561400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:95556800-95561400	Strong transcription	NHEK	skin
41	chr4:95557000-95564200	Weak transcription	Psoas Muscle	Psoas
42	chr4:95557200-95561200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:95557200-95563000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:95557200-95570600	Weak transcription	Fetal Intestine Small	intestine
45	chr4:95557200-95588600	Weak transcription	GM12878-XiMat	blood
46	chr4:95557400-95562000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:95557400-95562000	Weak transcription	NHDF-Ad	bronchial
48	chr4:95557400-95569800	Weak transcription	Fetal Heart	heart
49	chr4:95557400-95583800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr4:95557600-95561400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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