Variant report

Variant	rs6822264
Chromosome Location	chr4:95527797-95527798
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10001372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033359	1.00[EUR][1000 genomes]
rs10856910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1389161	1.00[EUR][1000 genomes]
rs2131455	1.00[EUR][1000 genomes]
rs2452595	1.00[EUR][1000 genomes]
rs2452596	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2865371	1.00[AMR][1000 genomes]
rs3857212	1.00[EUR][1000 genomes]
rs4699303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699555	1.00[AMR][1000 genomes]
rs6532493	1.00[AFR][1000 genomes]
rs7662768	1.00[AMR][1000 genomes]
rs7662914	1.00[AFR][1000 genomes]
rs966845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95489600-95539200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:95493200-95540200	Weak transcription	Small Intestine	intestine
3	chr4:95493200-95584800	Weak transcription	Primary B cells from cord blood	blood
4	chr4:95497200-95553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:95497200-95569400	Weak transcription	Esophagus	oesophagus
6	chr4:95497400-95542000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:95497600-95539200	Weak transcription	HepG2	liver
8	chr4:95507200-95548200	Weak transcription	Psoas Muscle	Psoas
9	chr4:95507200-95548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:95507800-95539200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:95511200-95554800	Weak transcription	NHDF-Ad	bronchial
12	chr4:95513000-95539000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:95514200-95539200	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:95514400-95539200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:95514400-95544600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:95514600-95530800	Weak transcription	Primary T cells from cord blood	blood
17	chr4:95514600-95539200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:95514600-95542600	Weak transcription	NHEK	skin
19	chr4:95514800-95531200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:95514800-95532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:95514800-95539000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:95515000-95538600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:95515000-95562000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:95520600-95532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:95521000-95529800	Weak transcription	HMEC	breast
26	chr4:95521400-95529000	Weak transcription	Liver	Liver
27	chr4:95521400-95531200	Weak transcription	Fetal Intestine Large	intestine
28	chr4:95521600-95528400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:95521600-95528800	Weak transcription	HSMM	muscle
30	chr4:95521600-95544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:95522200-95538200	Weak transcription	Placenta	Placenta
32	chr4:95522400-95532200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr4:95525000-95531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:95525000-95533600	Weak transcription	Gastric	stomach
35	chr4:95525000-95538600	Weak transcription	Fetal Intestine Small	intestine
36	chr4:95525000-95538600	Weak transcription	Right Ventricle	heart
37	chr4:95525000-95539200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:95525000-95539200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr4:95525000-95569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:95525000-95586400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:95525000-95590000	Weak transcription	Lung	lung
42	chr4:95525400-95539200	Weak transcription	HSMMtube	muscle
43	chr4:95525400-95562200	Weak transcription	NHLF	lung
44	chr4:95525600-95528800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:95525600-95531200	Weak transcription	Left Ventricle	heart
46	chr4:95526600-95529000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:95526600-95529400	Weak transcription	NH-A	brain
48	chr4:95526600-95539000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:95526600-95539200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr4:95526600-95539200	Weak transcription	Ovary	ovary

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