Variant report
| Variant | rs13146324 |
|---|---|
| Chromosome Location | chr4:175659255-175659256 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10004000 | 0.91[CEU][hapmap] |
| rs1012342 | 0.91[CEU][hapmap] |
| rs11727514 | 0.91[CEU][hapmap];0.92[JPT][hapmap] |
| rs12645532 | 0.81[EUR][1000 genomes] |
| rs13113891 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17060817 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs17060818 | 0.82[YRI][hapmap] |
| rs2029569 | 0.91[CEU][hapmap] |
| rs4695789 | 1.00[CHB][hapmap] |
| rs4695958 | 1.00[CHB][hapmap] |
| rs4695959 | 1.00[CHB][hapmap] |
| rs6553811 | 1.00[CHB][hapmap] |
| rs6553812 | 1.00[CHB][hapmap] |
| rs6553814 | 1.00[CHB][hapmap] |
| rs6553815 | 0.87[YRI][hapmap] |
| rs6826425 | 0.82[YRI][hapmap] |
| rs6838215 | 0.91[CEU][hapmap] |
| rs6850542 | 0.87[YRI][hapmap] |
| rs6857167 | 0.84[YRI][hapmap] |
| rs7654132 | 0.82[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs7655252 | 0.84[YRI][hapmap] |
| rs7665933 | 1.00[CHB][hapmap] |
| rs7689368 | 0.82[CEU][hapmap] |
| rs7690850 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9884792 | 0.84[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018390 | chr4:175475505-175969742 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034301 | chr4:175656538-176055348 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv537364 | chr4:175656538-176055348 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
