Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13146324	0.84[YRI][hapmap]
rs17060817	0.84[YRI][hapmap]
rs17060818	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs28575210	0.94[EUR][1000 genomes]
rs6553815	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6818269	0.94[EUR][1000 genomes]
rs6823897	1.00[CEU][hapmap]
rs6824151	1.00[CEU][hapmap]
rs6824521	1.00[CEU][hapmap]
rs6826425	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6827308	1.00[CEU][hapmap]
rs6828970	1.00[CEU][hapmap]
rs6840689	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6850542	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6851653	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6851854	1.00[CEU][hapmap]
rs7654132	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655252	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7656007	1.00[CEU][hapmap]
rs7684841	1.00[CEU][hapmap]
rs9884792	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1034301	chr4:175656538-176055348	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv537364	chr4:175656538-176055348	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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