Variant report
| Variant | rs7655252 |
|---|---|
| Chromosome Location | chr4:175660680-175660681 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:175659609..175661689-chr4:175672380..175674735,2 | MCF-7 | breast: | |
| 2 | chr4:175654877..175657458-chr4:175659006..175661544,3 | K562 | blood: | |
| 3 | chr4:175660189..175662051-chr4:175663383..175664911,2 | MCF-7 | breast: | |
| 4 | chr4:175654313..175656793-chr4:175658655..175661550,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs13146324 | 0.84[YRI][hapmap] |
| rs17060817 | 0.84[YRI][hapmap] |
| rs17060818 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs28575210 | 0.94[EUR][1000 genomes] |
| rs6553815 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6818269 | 0.94[EUR][1000 genomes] |
| rs6823897 | 1.00[CEU][hapmap] |
| rs6824151 | 1.00[CEU][hapmap] |
| rs6824521 | 1.00[CEU][hapmap] |
| rs6826425 | 1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6827308 | 1.00[CEU][hapmap] |
| rs6828970 | 1.00[CEU][hapmap] |
| rs6840689 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs6850542 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6851653 | 1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs6851854 | 1.00[CEU][hapmap] |
| rs6857167 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7654132 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7656007 | 1.00[CEU][hapmap] |
| rs7684841 | 1.00[CEU][hapmap] |
| rs9884792 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018390 | chr4:175475505-175969742 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034301 | chr4:175656538-176055348 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv537364 | chr4:175656538-176055348 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
