Variant report

Variant	rs13156561
Chromosome Location	chr5:128097599-128097600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10042834	0.82[EUR][1000 genomes]
rs10075245	0.83[EUR][1000 genomes]
rs1012263	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11741074	0.83[EUR][1000 genomes]
rs11742783	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12054810	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12522121	0.81[EUR][1000 genomes]
rs12719381	0.83[EUR][1000 genomes]
rs13169119	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181669	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13186067	0.82[EUR][1000 genomes]
rs13190353	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1422444	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1422447	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35111151	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4836401	0.82[EUR][1000 genomes]
rs4836403	0.82[EUR][1000 genomes]
rs4836404	0.83[EUR][1000 genomes]
rs4836406	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128093200-128098600	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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