Variant report

Variant	rs13181669
Chromosome Location	chr5:128107509-128107510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10042834	0.82[EUR][1000 genomes]
rs10075245	0.82[EUR][1000 genomes]
rs1012263	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11741074	0.82[EUR][1000 genomes]
rs11742783	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12054810	0.92[EUR][1000 genomes]
rs12522121	0.82[EUR][1000 genomes]
rs12719381	0.82[EUR][1000 genomes]
rs13156561	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13169119	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13186067	0.82[EUR][1000 genomes]
rs13190353	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1422444	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1422447	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35111151	0.94[EUR][1000 genomes]
rs4836401	0.82[EUR][1000 genomes]
rs4836403	0.82[EUR][1000 genomes]
rs4836404	0.82[EUR][1000 genomes]
rs4836406	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13181669	SLC27A6	cis	parietal	SCAN
rs13181669	CCNI2	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128104000-128113600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128106800-128109000	Weak transcription	HUVEC	blood vessel
3	chr5:128107000-128109200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:128107000-128110400	Weak transcription	Fetal Lung	lung
5	chr5:128107400-128109400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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