Variant report

Variant	rs13186067
Chromosome Location	chr5:128108007-128108008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11742783	0.81[EUR][1000 genomes]
rs12522121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13156561	0.82[EUR][1000 genomes]
rs13179872	0.81[EUR][1000 genomes]
rs13181669	0.82[EUR][1000 genomes]
rs13190353	0.81[EUR][1000 genomes]
rs2545015	0.85[YRI][hapmap]
rs62391237	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62391238	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882836	chr5:127999225-128136519	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13186067	CCNI2	cis	parietal	SCAN
rs13186067	SLC27A6	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128104000-128113600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:128106800-128109000	Weak transcription	HUVEC	blood vessel
3	chr5:128107000-128109200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:128107000-128110400	Weak transcription	Fetal Lung	lung
5	chr5:128107400-128109400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:128107600-128108200	Enhancers	Brain Substantia Nigra	brain
7	chr5:128107800-128108200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:128107800-128108200	Enhancers	Brain Angular Gyrus	brain
9	chr5:128107800-128108400	Enhancers	Colon Smooth Muscle	Colon
10	chr5:128107800-128108600	Enhancers	Fetal Muscle Leg	muscle
11	chr5:128108000-128108400	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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