Variant report

Variant	rs13179872
Chromosome Location	chr5:128149876-128149877
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11740215	0.82[CHB][hapmap]
rs12189398	0.82[AMR][1000 genomes]
rs12518184	0.84[AMR][1000 genomes]
rs12522121	0.82[EUR][1000 genomes]
rs13169590	0.82[AMR][1000 genomes]
rs13186067	0.81[EUR][1000 genomes]
rs17616974	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs17616991	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2526243	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2526245	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2526246	0.82[CHB][hapmap]
rs2526247	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2526248	0.82[CHB][hapmap];0.93[CHD][hapmap]
rs2526249	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2526251	0.82[CHB][hapmap]
rs2526257	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2545015	0.82[CHB][hapmap]
rs2577429	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2577436	1.00[CHB][hapmap]
rs2577533	0.82[CHB][hapmap]
rs2577540	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2577541	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2577542	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2577543	0.82[CHB][hapmap]
rs2577545	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs2577546	0.82[CHB][hapmap]
rs62391237	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62391238	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13179872	SLC27A6	cis	parietal	SCAN
rs13179872	CCNI2	cis	parietal	SCAN
rs13179872	SLC12A2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128143600-128151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:128148400-128150000	Enhancers	HUVEC	blood vessel
3	chr5:128149000-128150600	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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