Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13166839	1.00[AFR][1000 genomes]
rs13170479	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34043196	1.00[AFR][1000 genomes]
rs34049784	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34339324	1.00[AFR][1000 genomes]
rs34399231	1.00[AFR][1000 genomes]
rs34696334	1.00[AFR][1000 genomes]
rs35059338	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35175635	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35279969	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35931781	0.93[AMR][1000 genomes]
rs36014970	0.86[AMR][1000 genomes]
rs36090405	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71620200	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71621960	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71621967	0.86[AMR][1000 genomes]
rs71621976	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71621977	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71621978	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71621979	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:46397400-46401000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr5:46399200-46400600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:46399800-46400600	ZNF genes & repeats	Liver	Liver
7	chr5:46400200-46400600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:46400400-46400600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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