Variant report

Variant	rs36090405
Chromosome Location	chr5:46402739-46402740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13157926	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13164360	1.00[AFR][1000 genomes]
rs13170479	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13173746	1.00[AFR][1000 genomes]
rs13177011	1.00[AFR][1000 genomes]
rs13177150	1.00[AFR][1000 genomes]
rs13184551	1.00[AFR][1000 genomes]
rs13185535	1.00[AFR][1000 genomes]
rs13190399	1.00[AFR][1000 genomes]
rs34049784	0.90[AMR][1000 genomes]
rs34097293	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34171995	1.00[AFR][1000 genomes]
rs34596501	1.00[AFR][1000 genomes]
rs34634456	1.00[AFR][1000 genomes]
rs34821375	1.00[AFR][1000 genomes]
rs35059338	0.93[AMR][1000 genomes]
rs35175635	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35279969	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35354757	1.00[AFR][1000 genomes]
rs35620350	1.00[AFR][1000 genomes]
rs35845131	1.00[AFR][1000 genomes]
rs35901008	1.00[AFR][1000 genomes]
rs35931781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36014970	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs71620160	1.00[AFR][1000 genomes]
rs71620200	0.93[AMR][1000 genomes]
rs71621960	0.93[AMR][1000 genomes]
rs71621967	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs71621976	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71621977	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71621978	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71621979	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46391400-46404600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr5:46391600-46405400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:46391600-46405600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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