Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13155164	1.00[AFR][1000 genomes]
rs13157926	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13166839	1.00[AFR][1000 genomes]
rs13170479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34043196	1.00[AFR][1000 genomes]
rs34049784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34097293	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34339324	1.00[AFR][1000 genomes]
rs34399231	1.00[AFR][1000 genomes]
rs34696334	1.00[AFR][1000 genomes]
rs35059338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35175635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35931781	0.93[AMR][1000 genomes]
rs36014970	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36090405	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71620200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71621960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71621967	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71621976	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71621977	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71621978	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71621979	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598016	chr5:46199395-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv19788	chr5:46271528-46405359	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv598083	chr5:46276787-46399274	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:46382200-46391600	Weak transcription	NH-A	brain
2	chr5:46385400-46391600	Weak transcription	HUVEC	blood vessel
3	chr5:46391000-46397800	Weak transcription	NHLF	lung

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