Variant report

Variant	rs13161024
Chromosome Location	chr5:36395863-36395864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12656145	0.82[ASN][1000 genomes]
rs13356785	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902990	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902995	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35113974	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4418129	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422552	0.82[ASN][1000 genomes]
rs57140841	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59229660	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59553143	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60445056	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865918	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6873762	0.81[EUR][1000 genomes]
rs7702391	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36389800-36397400	Weak transcription	Fetal Kidney	kidney
2	chr5:36391200-36403200	Weak transcription	Placenta	Placenta
3	chr5:36391800-36400600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:36393200-36397000	Weak transcription	Fetal Lung	lung
5	chr5:36393800-36396400	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:36393800-36397200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:36393800-36403600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:36394000-36396600	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:36394000-36396800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:36394000-36397000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:36394000-36397200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:36394000-36402600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:36394000-36402800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:36394600-36396800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:36394800-36402800	Weak transcription	HSMM	muscle
16	chr5:36395000-36396600	Weak transcription	Osteobl	bone
17	chr5:36395000-36397200	Weak transcription	NHDF-Ad	bronchial
18	chr5:36395200-36396200	Enhancers	Primary B cells from cord blood	blood
19	chr5:36395400-36396600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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