Variant report

Variant	rs60445056
Chromosome Location	chr5:36397150-36397151
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12656145	0.82[ASN][1000 genomes]
rs13161024	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356785	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902990	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902995	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2937532	0.83[AMR][1000 genomes]
rs2967068	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs35113974	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4418129	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4422552	0.82[ASN][1000 genomes]
rs57140841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59229660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59553143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865918	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6873762	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7702391	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36389800-36397400	Weak transcription	Fetal Kidney	kidney
2	chr5:36391200-36403200	Weak transcription	Placenta	Placenta
3	chr5:36391800-36400600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:36393800-36397200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:36393800-36403600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:36394000-36397200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:36394000-36402600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:36394000-36402800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:36394800-36402800	Weak transcription	HSMM	muscle
10	chr5:36395000-36397200	Weak transcription	NHDF-Ad	bronchial
11	chr5:36396400-36401600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:36396600-36397800	Enhancers	Osteobl	bone
13	chr5:36396600-36398400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:36396600-36398400	Enhancers	Colon Smooth Muscle	Colon
15	chr5:36396800-36397400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:36396800-36397600	Enhancers	Hela-S3	cervix
17	chr5:36396800-36398400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:36396800-36398400	Enhancers	HepG2	liver
19	chr5:36397000-36397200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:36397000-36397200	Enhancers	Fetal Lung	lung

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