Variant report

Variant	rs13356785
Chromosome Location	chr5:36388117-36388118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13161024	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902990	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902995	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35113974	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4418129	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57140841	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59229660	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59553143	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60445056	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6873762	0.84[EUR][1000 genomes]
rs7702391	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13356785	SKP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36375000-36390600	Weak transcription	Lung	lung
2	chr5:36381000-36393600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:36385200-36392200	Weak transcription	Spleen	Spleen
4	chr5:36385400-36388600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:36385400-36388600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:36385400-36389000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:36385400-36389000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:36385400-36389200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:36385800-36388800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:36385800-36389000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:36387400-36388600	Weak transcription	Ovary	ovary
12	chr5:36387800-36389200	Enhancers	Placenta	Placenta
13	chr5:36387800-36391000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:36388000-36390000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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