Variant report

Variant	rs13164037
Chromosome Location	chr5:79597759-79597760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10074004	0.86[ASN][1000 genomes]
rs10075671	0.86[ASN][1000 genomes]
rs11738136	0.88[ASN][1000 genomes]
rs11749041	0.82[ASN][1000 genomes]
rs12653544	0.84[ASN][1000 genomes]
rs12657791	0.86[ASN][1000 genomes]
rs12658132	0.80[ASN][1000 genomes]
rs12659957	0.86[ASN][1000 genomes]
rs13159554	0.86[ASN][1000 genomes]
rs13163577	0.86[ASN][1000 genomes]
rs13180593	0.82[ASN][1000 genomes]
rs13188686	0.82[ASN][1000 genomes]
rs36034781	0.82[ASN][1000 genomes]
rs56289111	0.82[ASN][1000 genomes]
rs6886552	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv980690	chr5:79591958-79614381	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79596200-79598400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79596200-79598400	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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