Variant report
| Variant | rs56289111 |
|---|---|
| Chromosome Location | chr5:79593186-79593187 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10074004 | 0.90[ASN][1000 genomes] |
| rs10075671 | 0.90[ASN][1000 genomes] |
| rs10942916 | 0.96[ASN][1000 genomes] |
| rs11738136 | 0.91[ASN][1000 genomes] |
| rs11749041 | 1.00[ASN][1000 genomes] |
| rs12519081 | 0.96[ASN][1000 genomes] |
| rs12653544 | 0.88[ASN][1000 genomes] |
| rs12655682 | 0.95[ASN][1000 genomes] |
| rs12657791 | 0.90[ASN][1000 genomes] |
| rs12658132 | 0.98[ASN][1000 genomes] |
| rs12659957 | 0.90[ASN][1000 genomes] |
| rs13159554 | 0.90[ASN][1000 genomes] |
| rs13163577 | 0.90[ASN][1000 genomes] |
| rs13164037 | 0.82[ASN][1000 genomes] |
| rs13180593 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13188686 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2112156 | 0.88[ASN][1000 genomes] |
| rs28508166 | 0.96[ASN][1000 genomes] |
| rs36034781 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4704658 | 0.82[ASN][1000 genomes] |
| rs62364038 | 0.96[ASN][1000 genomes] |
| rs6859566 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6868653 | 0.84[ASN][1000 genomes] |
| rs6886552 | 0.81[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6890238 | 0.96[ASN][1000 genomes] |
| rs72778015 | 0.96[ASN][1000 genomes] |
| rs72778016 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv980690 | chr5:79591958-79614381 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79580600-79595400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
