Variant report
Variant | rs6868653 |
---|---|
Chromosome Location | chr5:79594422-79594423 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10074004 | 0.89[AFR][1000 genomes] |
rs10075671 | 0.88[AFR][1000 genomes] |
rs10942916 | 0.81[ASN][1000 genomes] |
rs11749041 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12519081 | 0.81[ASN][1000 genomes] |
rs12658132 | 0.82[ASN][1000 genomes] |
rs13180593 | 0.84[ASN][1000 genomes] |
rs13188686 | 0.84[ASN][1000 genomes] |
rs28508166 | 0.81[ASN][1000 genomes] |
rs36034781 | 0.84[ASN][1000 genomes] |
rs4704658 | 0.97[ASN][1000 genomes] |
rs56289111 | 0.84[ASN][1000 genomes] |
rs62364038 | 0.81[ASN][1000 genomes] |
rs6886552 | 0.82[ASN][1000 genomes] |
rs6890238 | 0.81[ASN][1000 genomes] |
rs72778015 | 0.81[ASN][1000 genomes] |
rs72778016 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
3 | nsv980690 | chr5:79591958-79614381 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:79580600-79595400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |