Variant report
| Variant | rs62364038 |
|---|---|
| Chromosome Location | chr5:79576626-79576627 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10074004 | 0.86[ASN][1000 genomes] |
| rs10075671 | 0.86[ASN][1000 genomes] |
| rs10942916 | 1.00[ASN][1000 genomes] |
| rs11738136 | 0.88[ASN][1000 genomes] |
| rs11749041 | 0.96[ASN][1000 genomes] |
| rs12519081 | 1.00[ASN][1000 genomes] |
| rs12653544 | 0.84[ASN][1000 genomes] |
| rs12655682 | 0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12657791 | 0.86[ASN][1000 genomes] |
| rs12658132 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12659957 | 0.86[ASN][1000 genomes] |
| rs13159554 | 0.86[ASN][1000 genomes] |
| rs13163577 | 0.86[ASN][1000 genomes] |
| rs13180593 | 0.96[ASN][1000 genomes] |
| rs13188686 | 0.96[ASN][1000 genomes] |
| rs2112156 | 0.91[ASN][1000 genomes] |
| rs28508166 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs36034781 | 0.96[ASN][1000 genomes] |
| rs56289111 | 0.96[ASN][1000 genomes] |
| rs6859566 | 0.93[ASN][1000 genomes] |
| rs6868653 | 0.81[ASN][1000 genomes] |
| rs6886552 | 0.98[ASN][1000 genomes] |
| rs6890238 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72778015 | 1.00[ASN][1000 genomes] |
| rs72778016 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432748 | chr5:79300434-79577760 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79553400-79577800 | Weak transcription | Right Atrium | heart |
| 2 | chr5:79567800-79580400 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
