Variant report

Variant	rs6859566
Chromosome Location	chr5:79568084-79568085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10942916	0.93[ASN][1000 genomes]
rs11738136	0.81[ASN][1000 genomes]
rs11749041	0.90[ASN][1000 genomes]
rs12519081	0.93[ASN][1000 genomes]
rs12655682	0.92[ASN][1000 genomes]
rs12658132	0.92[ASN][1000 genomes]
rs13180593	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13188686	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2112156	0.87[ASN][1000 genomes]
rs28508166	0.90[ASN][1000 genomes]
rs36034781	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56289111	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62364038	0.93[ASN][1000 genomes]
rs6886552	0.91[ASN][1000 genomes]
rs6890238	0.93[ASN][1000 genomes]
rs72778015	0.93[ASN][1000 genomes]
rs72778016	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:79561600-79569800	Enhancers	Primary T cells from cord blood	blood
4	chr5:79563600-79569200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr5:79563800-79569400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr5:79563800-79569400	Enhancers	Fetal Thymus	thymus
7	chr5:79566400-79569400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:79567000-79571000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:79567800-79571000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:79568000-79568400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr5:79568000-79569000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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