Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79549776..79552176-chr5:79572981..79575249,2	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10074004	0.86[ASN][1000 genomes]
rs10075671	0.86[ASN][1000 genomes]
rs11738136	0.88[ASN][1000 genomes]
rs11749041	0.96[ASN][1000 genomes]
rs12519081	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653544	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12655682	0.99[ASN][1000 genomes]
rs12657791	0.86[ASN][1000 genomes]
rs12658132	0.99[ASN][1000 genomes]
rs12659957	0.86[ASN][1000 genomes]
rs13159554	0.86[ASN][1000 genomes]
rs13163577	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs13180593	0.96[ASN][1000 genomes]
rs13188686	0.96[ASN][1000 genomes]
rs2112156	0.91[ASN][1000 genomes]
rs28508166	0.97[ASN][1000 genomes]
rs36034781	0.96[ASN][1000 genomes]
rs4704659	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs56289111	0.96[ASN][1000 genomes]
rs62364038	1.00[ASN][1000 genomes]
rs6859566	0.93[ASN][1000 genomes]
rs6868653	0.81[ASN][1000 genomes]
rs6886552	0.98[ASN][1000 genomes]
rs6890238	1.00[ASN][1000 genomes]
rs72778015	1.00[ASN][1000 genomes]
rs72778016	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79567800-79580400	Weak transcription	Primary T helper cells fromperipheralblood	blood

Quick Search: