Variant report

Variant	rs6886552
Chromosome Location	chr5:79590674-79590675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10074004	0.88[ASN][1000 genomes]
rs10075671	0.88[ASN][1000 genomes]
rs10942916	0.90[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11738136	0.90[ASN][1000 genomes]
rs11749041	0.99[ASN][1000 genomes]
rs12519081	0.98[ASN][1000 genomes]
rs12653544	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12655682	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12657791	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12658132	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12659957	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13159554	0.88[ASN][1000 genomes]
rs13163577	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs13164037	0.81[ASN][1000 genomes]
rs13180593	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs13188686	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2112156	0.89[ASN][1000 genomes]
rs28508166	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36034781	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4704658	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4704659	0.90[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs56289111	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62364038	0.98[ASN][1000 genomes]
rs6859566	0.91[ASN][1000 genomes]
rs6868653	0.82[ASN][1000 genomes]
rs6890238	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72778015	0.98[ASN][1000 genomes]
rs72778016	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79580600-79595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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