The 2.0 version of rSNPBase

Variant report

Variant rs13164391
Chromosome Location chr5:59056816-59056817
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:59039400-59059800 Weak transcription Primary B cells from cord blood blood
2 chr5:59048800-59059400 Weak transcription Primary B cells from peripheral blood blood
3 chr5:59048800-59064000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr5:59052600-59064200 Weak transcription Aorta Aorta
5 chr5:59052800-59057600 Enhancers Pancreatic Islets Pancreatic Islet
6 chr5:59053200-59058800 Weak transcription Fetal Intestine Large intestine
7 chr5:59053800-59057600 Enhancers NHEK skin
8 chr5:59054000-59057600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr5:59054200-59062200 Weak transcription HUES6 Cell Line embryonic stem cell
10 chr5:59054600-59061400 Weak transcription Duodenum Mucosa Duodenum
11 chr5:59054800-59057000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:59055200-59057000 Enhancers Colon Smooth Muscle Colon
13 chr5:59055200-59057200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr5:59055200-59057600 Enhancers Muscle Satellite Cultured Cells --
15 chr5:59055200-59058000 Enhancers Fetal Lung lung
16 chr5:59055200-59061400 Weak transcription Fetal Brain Male brain
17 chr5:59055400-59057000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:59055400-59057600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr5:59055400-59057800 Enhancers NH-A brain
20 chr5:59055600-59057000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr5:59055800-59057800 Enhancers Hela-S3 cervix
22 chr5:59055800-59061400 Weak transcription Esophagus oesophagus
23 chr5:59055800-59061800 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr5:59055800-59062000 Weak transcription Fetal Stomach stomach
25 chr5:59055800-59063600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr5:59056200-59057400 Flanking Active TSS HUVEC blood vessel
27 chr5:59056400-59057000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr5:59056400-59057000 Enhancers Stomach Mucosa stomach
29 chr5:59056400-59057000 Flanking Active TSS A549 lung
30 chr5:59056400-59057200 Enhancers Rectal Smooth Muscle rectum
31 chr5:59056600-59057000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr5:59056600-59057000 Enhancers Primary neutrophils fromperipheralblood blood
33 chr5:59056600-59057000 Flanking Active TSS HMEC breast
34 chr5:59056600-59057000 Enhancers Monocytes-CD14+_RO01746 blood
35 chr5:59056600-59057200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr5:59056600-59057200 Enhancers Osteobl bone
37 chr5:59056600-59059400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
38 chr5:59056800-59057000 Enhancers Fetal Intestine Small intestine
39 chr5:59056800-59057000 Enhancers Fetal Kidney kidney
40 chr5:59056800-59057000 Enhancers Small Intestine intestine
41 chr5:59056800-59057200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr5:59056800-59059600 Weak transcription Placenta Amnion Placenta Amnion
43 chr5:59056800-59062200 Weak transcription HSMM muscle

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Last update: Aug 31, 2015