Variant report
Variant | rs61229155 |
---|---|
Chromosome Location | chr5:59152313-59152314 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10045168 | 1.00[ASN][1000 genomes] |
rs10052367 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10052716 | 1.00[ASN][1000 genomes] |
rs10061031 | 0.81[EUR][1000 genomes] |
rs10062207 | 0.81[EUR][1000 genomes] |
rs10062267 | 1.00[ASN][1000 genomes] |
rs10065233 | 1.00[ASN][1000 genomes] |
rs10069755 | 0.81[EUR][1000 genomes] |
rs10073739 | 1.00[ASN][1000 genomes] |
rs10076314 | 0.81[EUR][1000 genomes] |
rs10076914 | 1.00[ASN][1000 genomes] |
rs10472114 | 1.00[ASN][1000 genomes] |
rs11741470 | 1.00[ASN][1000 genomes] |
rs12332620 | 0.81[EUR][1000 genomes] |
rs13164391 | 1.00[ASN][1000 genomes] |
rs13168643 | 1.00[ASN][1000 genomes] |
rs13177163 | 1.00[ASN][1000 genomes] |
rs13359864 | 0.81[EUR][1000 genomes] |
rs13361053 | 1.00[ASN][1000 genomes] |
rs159615 | 1.00[ASN][1000 genomes] |
rs159618 | 1.00[ASN][1000 genomes] |
rs159621 | 1.00[ASN][1000 genomes] |
rs159625 | 0.83[ASN][1000 genomes] |
rs16890078 | 0.83[ASN][1000 genomes] |
rs173944 | 1.00[ASN][1000 genomes] |
rs194368 | 1.00[ASN][1000 genomes] |
rs1960603 | 1.00[ASN][1000 genomes] |
rs256349 | 1.00[ASN][1000 genomes] |
rs256351 | 1.00[ASN][1000 genomes] |
rs256354 | 1.00[ASN][1000 genomes] |
rs35302677 | 1.00[ASN][1000 genomes] |
rs56063442 | 1.00[ASN][1000 genomes] |
rs57261749 | 0.81[EUR][1000 genomes] |
rs58802762 | 1.00[ASN][1000 genomes] |
rs62370463 | 1.00[ASN][1000 genomes] |
rs62370466 | 1.00[ASN][1000 genomes] |
rs62370490 | 1.00[ASN][1000 genomes] |
rs62370491 | 1.00[ASN][1000 genomes] |
rs62370494 | 1.00[ASN][1000 genomes] |
rs62370495 | 1.00[ASN][1000 genomes] |
rs62370496 | 1.00[ASN][1000 genomes] |
rs62370498 | 1.00[ASN][1000 genomes] |
rs62370501 | 1.00[ASN][1000 genomes] |
rs62370505 | 1.00[ASN][1000 genomes] |
rs62370506 | 1.00[ASN][1000 genomes] |
rs62370529 | 1.00[ASN][1000 genomes] |
rs6865975 | 1.00[ASN][1000 genomes] |
rs72751228 | 1.00[ASN][1000 genomes] |
rs7706277 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7706573 | 1.00[ASN][1000 genomes] |
rs7729259 | 0.81[EUR][1000 genomes] |
rs7732908 | 1.00[ASN][1000 genomes] |
rs9292212 | 1.00[ASN][1000 genomes] |
rs9292213 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1018015 | chr5:58889470-59532667 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
2 | nsv537766 | chr5:58889470-59532667 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
3 | nsv534614 | chr5:58962510-59388525 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:59128200-59160400 | Weak transcription | Aorta | Aorta |
2 | chr5:59152000-59153000 | Enhancers | Fetal Brain Female | brain |
3 | chr5:59152200-59152600 | Active TSS | Brain Germinal Matrix | brain |
4 | chr5:59152200-59152600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
5 | chr5:59152200-59154000 | Enhancers | Fetal Brain Male | brain |