Variant report

Variant	rs13169097
Chromosome Location	chr5:58616197-58616198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10038855	1.00[CHB][hapmap]
rs10039990	1.00[CHB][hapmap]
rs10055869	1.00[CHB][hapmap]
rs10072367	1.00[CHB][hapmap]
rs16889495	1.00[CHB][hapmap]
rs16889508	1.00[CHB][hapmap]
rs16889512	1.00[CHB][hapmap]
rs17781354	0.82[JPT][hapmap]
rs17782238	0.82[JPT][hapmap]
rs17783275	0.82[JPT][hapmap]
rs187644	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9292199	1.00[CHB][hapmap]
rs9292200	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv917274	chr5:58565291-58814374	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1030117	chr5:58587672-58637179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760953	chr5:58609468-58620440	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58607800-58616400	Enhancers	Fetal Heart	heart
2	chr5:58612400-58616200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:58612800-58616600	Enhancers	A549	lung
4	chr5:58612800-58627200	Weak transcription	Aorta	Aorta
5	chr5:58613400-58617000	Weak transcription	Right Atrium	heart
6	chr5:58613600-58616200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:58613600-58616400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr5:58613600-58617000	Weak transcription	Right Ventricle	heart
9	chr5:58613600-58618000	Weak transcription	Small Intestine	intestine
10	chr5:58613600-58618600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:58613600-58618600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:58613600-58626600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:58613600-58628600	Weak transcription	Gastric	stomach
14	chr5:58613800-58618000	Weak transcription	Fetal Intestine Large	intestine
15	chr5:58613800-58619800	Weak transcription	Psoas Muscle	Psoas
16	chr5:58613800-58622600	Weak transcription	Fetal Brain Female	brain
17	chr5:58614000-58617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:58614000-58624600	Weak transcription	Fetal Stomach	stomach
19	chr5:58614200-58618400	Weak transcription	Fetal Intestine Small	intestine
20	chr5:58614400-58617000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr5:58614400-58618000	Weak transcription	Stomach Mucosa	stomach
22	chr5:58614800-58616200	Enhancers	Fetal Brain Male	brain
23	chr5:58615200-58616200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:58615200-58616200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:58615200-58616200	Enhancers	Fetal Muscle Leg	muscle
26	chr5:58615200-58616400	Enhancers	Fetal Kidney	kidney
27	chr5:58615400-58617000	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:58615600-58616800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr5:58615600-58617000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:58615800-58616200	Enhancers	Fetal Lung	lung
31	chr5:58615800-58616200	Enhancers	Left Ventricle	heart
32	chr5:58615800-58617400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:58616000-58616200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:58616000-58616800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr5:58616000-58617000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:58616000-58617000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:58616000-58617400	Weak transcription	Hela-S3	cervix

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