Variant report

Variant	rs9292199
Chromosome Location	chr5:58543663-58543664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10038855	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10039990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10045441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10055869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10072367	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13169097	1.00[CHB][hapmap]
rs13354612	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16889495	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16889508	1.00[CHB][hapmap]
rs16889512	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs9292200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1025807	chr5:58520050-58548231	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv520721	chr5:58520735-58558388	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58527400-58549800	Weak transcription	Aorta	Aorta
2	chr5:58535600-58551800	Weak transcription	HUVEC	blood vessel
3	chr5:58537600-58548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58537600-58553000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:58540800-58543800	Enhancers	Fetal Lung	lung
6	chr5:58541000-58545400	Enhancers	Rectal Smooth Muscle	rectum
7	chr5:58541200-58558400	Weak transcription	Pancreas	Pancrea
8	chr5:58541600-58560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:58542200-58544400	Enhancers	Fetal Heart	heart
12	chr5:58542200-58551600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:58542600-58544400	Enhancers	Fetal Kidney	kidney
14	chr5:58542600-58544400	Genic enhancers	Hela-S3	cervix
15	chr5:58542600-58548600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:58542800-58545200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:58543200-58544400	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:58543200-58545800	Genic enhancers	A549	lung
19	chr5:58543200-58552400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:58543400-58543800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr5:58543600-58543800	Enhancers	Right Atrium	heart
22	chr5:58543600-58544400	Enhancers	Left Ventricle	heart
23	chr5:58543600-58544400	Enhancers	Psoas Muscle	Psoas
24	chr5:58543600-58552200	Weak transcription	Fetal Intestine Large	intestine

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