Variant report

Variant	rs13172560
Chromosome Location	chr5:75739141-75739142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10045331	1.00[ASN][1000 genomes]
rs246788	1.00[ASN][1000 genomes]
rs34402282	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34567739	1.00[ASN][1000 genomes]
rs34590851	1.00[ASN][1000 genomes]
rs34786851	1.00[ASN][1000 genomes]
rs71630923	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:75722800-75767800	Weak transcription	Ovary	ovary
3	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr5:75729400-75751600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:75729800-75740800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:75732000-75745800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:75733000-75741000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr5:75734400-75741000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr5:75734800-75745600	Weak transcription	Thymus	Thymus
11	chr5:75734800-75745800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:75735800-75743000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:75735800-75745000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:75736000-75741000	Weak transcription	Primary B cells from cord blood	blood
15	chr5:75736200-75740800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:75736200-75741800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:75736400-75747000	Weak transcription	GM12878-XiMat	blood
18	chr5:75736600-75739200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:75736600-75740200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr5:75736600-75741000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr5:75736600-75743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr5:75736800-75742400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr5:75737000-75740000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:75737000-75744800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr5:75737000-75745200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:75737400-75741600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr5:75737600-75742600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:75737800-75741600	Weak transcription	Placenta	Placenta
29	chr5:75737800-75743400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:75737800-75743800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr5:75737800-75744800	Weak transcription	Fetal Thymus	thymus
32	chr5:75737800-75747000	Weak transcription	Gastric	stomach
33	chr5:75737800-75751400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:75738000-75740400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr5:75738000-75740800	Weak transcription	HepG2	liver
36	chr5:75738000-75744800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:75738200-75739200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:75738400-75739800	Enhancers	Fetal Lung	lung
39	chr5:75738400-75740400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:75738400-75741600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr5:75738400-75749200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr5:75738600-75744200	Weak transcription	Stomach Mucosa	stomach
43	chr5:75738600-75744400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:75738800-75739600	Enhancers	Fetal Stomach	stomach
45	chr5:75739000-75739800	Enhancers	Liver	Liver

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