Variant report

Variant	rs34786851
Chromosome Location	chr5:75707579-75707580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75706305..75708595-chr5:75709828..75711425,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10045331	1.00[ASN][1000 genomes]
rs13172560	1.00[ASN][1000 genomes]
rs246788	1.00[ASN][1000 genomes]
rs34402282	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34567739	1.00[ASN][1000 genomes]
rs34590851	1.00[ASN][1000 genomes]
rs71630923	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75701600-75713000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:75702000-75707800	Enhancers	HepG2	liver
4	chr5:75702200-75707800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:75703200-75717800	Weak transcription	Small Intestine	intestine
7	chr5:75703400-75715600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:75703400-75718000	Weak transcription	Primary T cells from cord blood	blood
9	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:75703800-75709000	Weak transcription	Primary B cells from cord blood	blood
11	chr5:75703800-75709400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:75704400-75708600	Weak transcription	GM12878-XiMat	blood
13	chr5:75704400-75709200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:75704400-75709400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:75704400-75709600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:75704600-75716800	Weak transcription	Fetal Intestine Small	intestine
17	chr5:75704800-75709200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:75705000-75708600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:75705400-75707800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr5:75705400-75709600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:75705600-75707800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:75705600-75708800	Enhancers	Liver	Liver
23	chr5:75706000-75707800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:75706000-75712200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:75706200-75707600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr5:75706200-75708400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:75706200-75708400	Enhancers	Pancreas	Pancrea
28	chr5:75706200-75708800	Genic enhancers	Primary hematopoietic stem cells	blood
29	chr5:75706400-75709800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:75706600-75707800	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr5:75706600-75708000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr5:75706800-75707600	Enhancers	Gastric	stomach
33	chr5:75706800-75707800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr5:75706800-75708000	Enhancers	Stomach Mucosa	stomach
35	chr5:75706800-75708600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:75706800-75718000	Weak transcription	Fetal Lung	lung
37	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr5:75707200-75707600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr5:75707200-75707800	Enhancers	H1 Cell Line	embryonic stem cell
40	chr5:75707200-75707800	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr5:75707200-75707800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr5:75707200-75707800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr5:75707400-75707800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr5:75707400-75708800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr5:75707400-75709600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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