Variant report

Variant	rs13184125
Chromosome Location	chr5:43870845-43870846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10462055	0.81[ASN][1000 genomes]
rs13155241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13157400	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13159393	0.81[ASN][1000 genomes]
rs13159427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13173726	0.81[ASN][1000 genomes]
rs13175037	0.81[ASN][1000 genomes]
rs13184706	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13184793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13185888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13186729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13188204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34250207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34557417	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34898039	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34930147	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35555406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35667947	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35684072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4615307	1.00[AFR][1000 genomes]
rs62368656	0.81[ASN][1000 genomes]
rs71631107	1.00[AFR][1000 genomes]
rs71631108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43869200-43871200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:43869800-43875000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr5:43870600-43871000	Enhancers	Fetal Heart	heart
4	chr5:43870800-43871200	Flanking Active TSS	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links