Variant report

Variant	rs34898039
Chromosome Location	chr5:43994456-43994457
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10461751	0.86[EUR][1000 genomes]
rs13155063	0.81[EUR][1000 genomes]
rs13155241	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13157400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157839	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13159427	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13162787	0.86[EUR][1000 genomes]
rs13163941	0.86[EUR][1000 genomes]
rs13170221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13171334	0.86[EUR][1000 genomes]
rs13175096	0.86[EUR][1000 genomes]
rs13182333	0.86[EUR][1000 genomes]
rs13184125	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13184580	0.86[EUR][1000 genomes]
rs13184706	1.00[AFR][1000 genomes]
rs13184793	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13185888	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13186056	0.86[EUR][1000 genomes]
rs13186729	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13188204	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34048286	0.86[EUR][1000 genomes]
rs34053815	0.86[EUR][1000 genomes]
rs34136561	0.86[EUR][1000 genomes]
rs34157568	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs34250207	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34338792	0.86[EUR][1000 genomes]
rs34371282	0.86[EUR][1000 genomes]
rs34464981	0.86[EUR][1000 genomes]
rs34518294	0.86[EUR][1000 genomes]
rs34528370	0.86[EUR][1000 genomes]
rs34557417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34579696	0.86[EUR][1000 genomes]
rs34601610	0.86[EUR][1000 genomes]
rs34632546	0.86[EUR][1000 genomes]
rs34685647	0.86[EUR][1000 genomes]
rs34758083	0.86[EUR][1000 genomes]
rs34782313	0.86[EUR][1000 genomes]
rs34843393	0.86[EUR][1000 genomes]
rs34928490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34930147	1.00[AFR][1000 genomes]
rs35009945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013918	0.86[EUR][1000 genomes]
rs35050534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35162434	0.86[EUR][1000 genomes]
rs35182890	0.86[EUR][1000 genomes]
rs35555406	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35667947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35684072	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35697247	0.86[EUR][1000 genomes]
rs35798472	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35939121	0.86[EUR][1000 genomes]
rs36030928	0.86[EUR][1000 genomes]
rs4543275	0.86[EUR][1000 genomes]
rs4615307	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4866757	0.86[EUR][1000 genomes]
rs4866760	0.86[EUR][1000 genomes]
rs71631107	1.00[AFR][1000 genomes]
rs71631108	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs71631110	0.86[EUR][1000 genomes]
rs71631119	0.86[EUR][1000 genomes]
rs71631120	0.86[EUR][1000 genomes]
rs71631121	0.86[EUR][1000 genomes]
rs71631187	0.86[EUR][1000 genomes]
rs71631189	0.86[EUR][1000 genomes]
rs71633107	0.86[EUR][1000 genomes]
rs71633110	0.86[EUR][1000 genomes]
rs71633113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9800184	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43993400-43995000	Enhancers	Liver	Liver
2	chr5:43993800-43998000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:43994200-43997800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:43994400-43995000	Enhancers	HepG2	liver
5	chr5:43994400-43997600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr5:43994400-43997800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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