Variant report

Variant	rs71631189
Chromosome Location	chr5:43953124-43953125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10461751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13155063	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13157400	0.86[EUR][1000 genomes]
rs13157839	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13159468	0.90[ASN][1000 genomes]
rs13162787	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13163941	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13170221	0.86[EUR][1000 genomes]
rs13171334	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13175096	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13182333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13184580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13186056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13189575	0.85[ASN][1000 genomes]
rs34048286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34053815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34085387	0.95[ASN][1000 genomes]
rs34136561	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34157568	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34338792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34371282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34464981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34518294	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34528370	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34557417	0.86[EUR][1000 genomes]
rs34579696	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34601610	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34602870	0.85[ASN][1000 genomes]
rs34632546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34685647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34758083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34782313	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34843393	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34898039	0.86[EUR][1000 genomes]
rs34928490	0.86[EUR][1000 genomes]
rs35009945	0.86[EUR][1000 genomes]
rs35013918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35029702	0.94[ASN][1000 genomes]
rs35050534	0.86[EUR][1000 genomes]
rs35092969	0.90[ASN][1000 genomes]
rs35140592	0.89[ASN][1000 genomes]
rs35162434	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35182890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35208539	0.95[ASN][1000 genomes]
rs35289692	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35374202	0.98[ASN][1000 genomes]
rs35430857	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35529195	0.90[ASN][1000 genomes]
rs35667947	0.86[EUR][1000 genomes]
rs35696398	0.97[ASN][1000 genomes]
rs35697247	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35730404	0.98[ASN][1000 genomes]
rs35789639	0.88[ASN][1000 genomes]
rs35792109	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35798472	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35939121	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35970538	0.85[ASN][1000 genomes]
rs36030354	0.95[ASN][1000 genomes]
rs36030928	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36062010	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4354051	0.90[ASN][1000 genomes]
rs4543275	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4563636	0.85[ASN][1000 genomes]
rs4597977	0.98[ASN][1000 genomes]
rs4615307	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4866756	0.97[ASN][1000 genomes]
rs4866757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4866760	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4866845	0.89[ASN][1000 genomes]
rs4866852	0.88[ASN][1000 genomes]
rs4866853	0.88[ASN][1000 genomes]
rs56337432	0.95[ASN][1000 genomes]
rs58731744	0.98[ASN][1000 genomes]
rs59751856	0.85[ASN][1000 genomes]
rs6451737	0.90[ASN][1000 genomes]
rs6451741	0.85[ASN][1000 genomes]
rs67443644	0.95[ASN][1000 genomes]
rs67991400	0.97[ASN][1000 genomes]
rs6859597	0.97[ASN][1000 genomes]
rs6860696	0.90[ASN][1000 genomes]
rs6864990	0.90[ASN][1000 genomes]
rs6870141	0.98[ASN][1000 genomes]
rs6882508	0.98[ASN][1000 genomes]
rs6887519	0.85[ASN][1000 genomes]
rs6888119	0.97[ASN][1000 genomes]
rs71631110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71631119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71631120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71631121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71631187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71633107	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71633109	0.90[ASN][1000 genomes]
rs71633110	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71633113	0.86[EUR][1000 genomes]
rs73753694	0.93[ASN][1000 genomes]
rs7714254	0.95[ASN][1000 genomes]
rs7721923	0.90[ASN][1000 genomes]
rs7730331	0.98[ASN][1000 genomes]
rs7731350	0.90[ASN][1000 genomes]
rs9800184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9800296	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019047	chr5:43939693-44301657	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830276	chr5:43951430-44150855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43953000-43953600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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