Variant report

Variant	rs35289692
Chromosome Location	chr5:43925515-43925516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10461751	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13155063	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13157839	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13159468	0.83[ASN][1000 genomes]
rs13162787	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13163941	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13171334	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13175096	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13182333	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13184580	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13186056	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34048286	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34053815	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34085387	0.98[ASN][1000 genomes]
rs34136561	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34157568	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34338792	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34371282	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34464981	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34518294	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34528370	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34579696	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34601610	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34632546	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34685647	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34758083	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34782313	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34843393	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35013918	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35029702	0.97[ASN][1000 genomes]
rs35092969	0.83[ASN][1000 genomes]
rs35140592	0.84[ASN][1000 genomes]
rs35162434	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35182890	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35208539	0.98[ASN][1000 genomes]
rs35374202	0.95[ASN][1000 genomes]
rs35430857	0.95[ASN][1000 genomes]
rs35529195	0.83[ASN][1000 genomes]
rs35696398	0.90[ASN][1000 genomes]
rs35697247	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35730404	0.95[ASN][1000 genomes]
rs35789639	0.81[ASN][1000 genomes]
rs35792109	0.98[ASN][1000 genomes]
rs35798472	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35939121	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36030354	0.98[ASN][1000 genomes]
rs36030928	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36062010	0.95[ASN][1000 genomes]
rs4354051	0.83[ASN][1000 genomes]
rs4543275	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4597977	0.95[ASN][1000 genomes]
rs4615307	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4866756	0.97[ASN][1000 genomes]
rs4866757	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4866760	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4866845	0.84[ASN][1000 genomes]
rs4866852	0.81[ASN][1000 genomes]
rs4866853	0.81[ASN][1000 genomes]
rs56337432	0.98[ASN][1000 genomes]
rs58731744	0.95[ASN][1000 genomes]
rs6451737	0.83[ASN][1000 genomes]
rs67443644	0.98[ASN][1000 genomes]
rs67991400	0.97[ASN][1000 genomes]
rs6859597	0.94[ASN][1000 genomes]
rs6860696	0.83[ASN][1000 genomes]
rs6864990	0.83[ASN][1000 genomes]
rs6870141	0.95[ASN][1000 genomes]
rs6882508	0.95[ASN][1000 genomes]
rs6888119	0.90[ASN][1000 genomes]
rs71631110	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71631119	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71631120	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71631121	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71631187	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71631189	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71633107	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71633109	0.83[ASN][1000 genomes]
rs71633110	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73753694	0.93[ASN][1000 genomes]
rs7714254	0.98[ASN][1000 genomes]
rs7721923	0.84[ASN][1000 genomes]
rs7730331	0.95[ASN][1000 genomes]
rs7731350	0.83[ASN][1000 genomes]
rs9800184	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9800296	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1009911	chr5:43918274-43929639	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43925200-43926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links