Variant report

Variant	rs9800296
Chromosome Location	chr5:43919879-43919880
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10461751	0.84[ASN][1000 genomes]
rs13162787	0.84[ASN][1000 genomes]
rs13171334	0.84[ASN][1000 genomes]
rs13182333	0.84[ASN][1000 genomes]
rs13184580	0.84[ASN][1000 genomes]
rs13186056	0.84[ASN][1000 genomes]
rs34048286	0.84[ASN][1000 genomes]
rs34053815	0.85[ASN][1000 genomes]
rs34085387	0.84[ASN][1000 genomes]
rs34136561	0.84[ASN][1000 genomes]
rs34338792	0.84[ASN][1000 genomes]
rs34371282	0.84[ASN][1000 genomes]
rs34464981	0.82[ASN][1000 genomes]
rs34518294	0.84[ASN][1000 genomes]
rs34758083	0.84[ASN][1000 genomes]
rs34782313	0.84[ASN][1000 genomes]
rs35013918	0.84[ASN][1000 genomes]
rs35029702	0.83[ASN][1000 genomes]
rs35162434	0.84[ASN][1000 genomes]
rs35182890	0.84[ASN][1000 genomes]
rs35208539	0.84[ASN][1000 genomes]
rs35289692	0.82[ASN][1000 genomes]
rs35374202	0.84[ASN][1000 genomes]
rs35430857	0.84[ASN][1000 genomes]
rs35697247	0.84[ASN][1000 genomes]
rs35730404	0.84[ASN][1000 genomes]
rs35792109	0.84[ASN][1000 genomes]
rs36030354	0.84[ASN][1000 genomes]
rs36062010	0.82[ASN][1000 genomes]
rs4291019	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4597977	0.84[ASN][1000 genomes]
rs4866756	0.85[ASN][1000 genomes]
rs4866757	0.84[ASN][1000 genomes]
rs56337432	0.84[ASN][1000 genomes]
rs58731744	0.84[ASN][1000 genomes]
rs67443644	0.84[ASN][1000 genomes]
rs67991400	0.85[ASN][1000 genomes]
rs6859597	0.83[ASN][1000 genomes]
rs6870141	0.84[ASN][1000 genomes]
rs6882508	0.84[ASN][1000 genomes]
rs71631110	0.84[ASN][1000 genomes]
rs71631119	0.84[ASN][1000 genomes]
rs71631120	0.85[ASN][1000 genomes]
rs71631121	0.84[ASN][1000 genomes]
rs71631187	0.83[ASN][1000 genomes]
rs71631189	0.82[ASN][1000 genomes]
rs73753694	0.81[ASN][1000 genomes]
rs7714254	0.84[ASN][1000 genomes]
rs7730331	0.84[ASN][1000 genomes]
rs9800184	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830374	chr5:43785548-44341631	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv1009911	chr5:43918274-43929639	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43918200-43921800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links